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   "source": [
    "# Course overview\n",
    "\n",
    "Lars Kaislaniemi and David Whipp\n",
    "\n",
    "14-18 May 2018"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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   },
   "source": [
    "## Let's get to know one another"
   ]
  },
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   "source": [
    "### Who are we?\n",
    "\n",
    "- Dave Whipp, Associate professor\n",
    "    - Geodynamics of convergent orogens\n",
    "    - Geomorphology\n",
    "\n",
    "- Lars Kaislaniemi, Postdoctoral researcher\n",
    "    - Geodynamics of the Bolivian Andes\n",
    "    - Mantle dynamics and geochemistry"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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    }
   },
   "source": [
    "### Who are you?\n",
    "<p>\n",
    "<img src=\"img/mystery-person.png\" alt=\"Mystery person\" style=\"float:left;\" height=\"300px\">\n",
    "<ul style=\"width: 50%;\">\n",
    "  <li>Name</li>\n",
    "  <li>Home university & program</li>\n",
    "  <li>Status (Ph.D., MSc, etc.)</li>\n",
    "  <li>Thesis topic</li>\n",
    "  <li>Experience with coding and/or modelling</li>\n",
    "</ul>\n",
    "</p>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "slideshow": {
     "slide_type": "slide"
    }
   },
   "source": [
    "## Practical matters"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "slideshow": {
     "slide_type": "subslide"
    }
   },
   "source": [
    "### Where are we?\n",
    "![D211](img/D211.png)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "slideshow": {
     "slide_type": "subslide"
    }
   },
   "source": [
    "### Toilets\n",
    "![Toilets](img/toilets.png)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "slideshow": {
     "slide_type": "subslide"
    }
   },
   "source": [
    "### Coffee/tea\n",
    "![Coffee/tea](img/coffee.png)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "slideshow": {
     "slide_type": "subslide"
    }
   },
   "source": [
    "### Lunch\n",
    "<p>\n",
    "  <img src=\"img/lunch.png\" alt=\"Mystery person\" style=\"float:left;\" height=\"500px\">\n",
    "  <ul style=\"width: 50%;\">\n",
    "    <li>You can get a <b>full hot lunch</b> at the Chemicum, Excatum, or Dynamicum (pricier, but a bit better).</li>\n",
    "    <li>The Unicafe (coffee / tea spot) also has <b>sandwiches / paninis</b></li>\n",
    "  </ul>\n",
    "</p>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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    }
   },
   "source": [
    "## Computer stuff and course website"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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     "slide_type": "subslide"
    }
   },
   "source": [
    "### Computers in this classroom\n",
    "\n",
    "- It's best if you use your own computer for this course\n",
    "\n",
    "- Computers in this classroom can also be used, but require a University of Helsinki IT account"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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    }
   },
   "source": [
    "### Software\n",
    "\n",
    "- All software used in this course is freely available\n",
    "- A list of software available for download is provided on the course website (next slide)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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    }
   },
   "source": [
    "### Course website\n",
    "\n",
    "- All course materials will be posted to the course website: [https://introgm.github.io](https://introgm.github.io)\n",
    "    - This page will provide links to lecture slides, scripts used for the course, and other materials\n",
    "    - We will be updating the page as we go.\n",
    "- The materials are freely available for use by anyone, subject to the license, so feel free to share with your friends/colleagues!"
   ]
  },
  {
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   },
   "source": [
    "## Course goals and learning objectives"
   ]
  },
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   "source": [
    "### Course goals\n",
    "\n",
    "- Understand the fundamental physical equations solved in numerical geodynamic models, how they work, and how they affect numerical experiments\n",
    "- Learn how to convert the main equations used to model lithospheric deformation into simple programs\n",
    "- Develop a background understanding of geodynamics that allows you to properly understand the behavior of geodynamic numerical models"
   ]
  },
  {
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   "source": [
    "### Learning objectives\n",
    "At the end of this course, students should be able to:\n",
    "\n",
    "- Solve partial differential equations using the finite-difference method\n",
    "- Differentiate between and implement various boundary and initial conditions in numerical models\n",
    "- Create their own 1D geodynamic models and know how to use modern 3D numerical geodynamic modelling software to simulate common physical processes in the Earth (heat transfer, rock deformation, etc.)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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   },
   "source": [
    "### Working methods\n",
    "<p align=\"left\">The course involves a combination of lectures and computer-based exercises</p>\n",
    "\n",
    "- We will try to keep lectures to a minimum, but we do need to present some material you will need to complete the computer exercises\n",
    "- For the computer exercises, you should work together with the others in the course and we will discuss your solutions after you have completed each exercise"
   ]
  },
  {
   "cell_type": "markdown",
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   },
   "source": [
    "## Schedule\n",
    "<p style = \"font-size:24px\">***Subject to change - Last updated 15.5.2018***</p>\n",
    "<p style = \"font-size:24px\">***Press space to view each day***</p>"
   ]
  },
  {
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   },
   "source": [
    "### Day 1\n",
    "<p style = \"font-size:24px\">\n",
    "09:30-10:00 - Course overview and introductions<br/>\n",
    "10:00-10:50 - Key physical processes/concepts<br/><br/>\n",
    "\n",
    "10:50-11:05 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "11:05-11:45 - Key physical processes/concepts (ctd.)<br/>\n",
    "11:45-12:15 - Solving equations<br/>\n",
    "12:15-12:30 - *Computer setup/introduction* (optional)<br/><br/>\n",
    "\n",
    "12:30-13:30 - ***Lunch***<br/><br/>\n",
    "\n",
    "13:30-14:50 - Python/computing essentials<br/><br/>\n",
    "\n",
    "14:50-15:05 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "15:05-16:30 - Python/computing essentials (ctd.)\n",
    "</p>"
   ]
  },
  {
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   "source": [
    "### Day 2\n",
    "<p style = \"font-size:24px\">\n",
    "09:30-10:50 - The finite difference method, part I<br/><br/>\n",
    "\n",
    "10:50-11:05 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "11:05-12:30 - The finite difference method, part I (ctd.)<br/><br/>\n",
    "\n",
    "12:30-13:30 - ***Lunch***<br/><br/>\n",
    "\n",
    "13:30-15:00 - Heat conduction and advection in 1D<br/><br/>\n",
    "\n",
    "15:00-15:15 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "15:15-16:30 - Heat conduction and advection in 1D (ctd.)\n",
    "</p>"
   ]
  },
  {
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   },
   "source": [
    "### Day 3\n",
    "<p style = \"font-size:24px\">\n",
    "09:30-10:50 - Testing your code and benchmarking<br/><br/>\n",
    "\n",
    "10:50-11:05 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "11:05-12:30 - Solving the momentum and continuity equations <br/><br/>\n",
    "\n",
    "12:30-13:30 - ***Lunch***<br/><br/>\n",
    "\n",
    "13:30-15:00 - Solving the momentum and continuity equations (ctd.)<br/><br/>\n",
    "\n",
    "15:00-15:15 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "15:15-16:30 - Free working time\n",
    "</p>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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   },
   "source": [
    "### Day 4\n",
    "<p style = \"font-size:24px\">\n",
    "09:30-10:50 - Introduction to DOUAR<br/><br/>\n",
    "\n",
    "10:50-11:05 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "11:05-12:30 - Cluster computing<br/><br/>\n",
    "\n",
    "12:30-13:30 - ***Lunch***<br/><br/>\n",
    "\n",
    "13:30-15:00 - Running a DOUAR model<br/><br/>\n",
    "\n",
    "15:00-15:15 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "15:15-16:30 - 3D visualization with ParaView\n",
    "</p>"
   ]
  },
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   },
   "source": [
    "### Day 5\n",
    "<p style = \"font-size:24px\">\n",
    "09:30-10:50 - Modifying the DOUAR models and re-running experiments<br/><br/>\n",
    "\n",
    "10:50-11:05 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "11:05-12:30 - Modifying the DOUAR models and re-running experiments (ctd.)<br/><br/>\n",
    "\n",
    "12:30-13:30 - ***Lunch***<br/><br/>\n",
    "\n",
    "13:30-13:45 - Course project description<br/>\n",
    "13:45-15:00 - Free time for experimentation with DOUAR<br/><br/>\n",
    "\n",
    "15:00-15:15 - ***Coffee/tea break***<br/><br/>\n",
    "\n",
    "15:15-16:30 - Free time for experimentation with DOUAR (ctd.)\n",
    "</p>"
   ]
  },
  {
   "cell_type": "markdown",
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   },
   "source": [
    "## Any questions?"
   ]
  }
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